NGS Analysis Tools

Affiliated Databases

Analysis Tools

The Ensembl Genome Database

• Web site: http://www.ensembl.org
• FTP site: ftp://ftp.ensembl.org/pub/current_human

NCBI Map Viewer

• Web site: http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi
• FTP site: ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/maps/mapview/

LocusLink, NCBI

• Web site: http://www.ncbi.nlm.nih.gov/LocusLink
• FTP site: ftp://ftp.ncbi.nih.gov/refseq/LocusLink/

Unigene, NCBI

• Web site: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene
• FTP site: ftp://ftp.ncbi.nih.gov/repository/UniGene/

The UCSC Genome Bioinformatics Site

• Web site: http://genome.cse.ucsc.edu/downloads.html
• FTP site: ftp://genome.cse.ucsc.edu/goldenPath/

Electronic PCR

• FTP site: ftp://ncbi.nlm.nih.gov/pub/schuler/e-PCR/
• Reference: Schuler, G. D. (1997). Sequence mapping by Electronic PCR. Genome Research 7: 541-550.

UniGene-Homo sapiens, NCBI

• Web site: http://www.ncbi.nlm.nih.gov/UniGene/Hs.Home.html
• FTP site: ftp://ncbi.nlm.nih.gov/repository/UniGene

GeneMap'99 - a Gene Map of the Human Genome

• Web site: http://www.ncbi.nlm.nih.gov/genemap/
• FTP site: ftp://ncbi.nlm.nih.gov/repository/genemap/
• Reference: Deloukas P. et al. (1998) "A physical map of 30,000 human genes". Science 282:744-6.

Whitehead Institute/MIT Center for Genome Research

• Web site: http://www-genome.wi.mit.edu/cgi-bin/contig/phys_map.
• FTP site: ftp://ftp-genome.wi.mit.edu/pub/human_STS_releases/.
• Reference: Hudson T. et al. (1995) "An STS-Based Map of the Human Genome". Science 270: 1945-1954.

Stanford Human Genome Center - Human Radiation Hybrid Maps

• Web site: http://shgc-www.stanford.edu/Mapping/rh/.
• FTP site: ftp://shgc.stanford.edu/pub/hgmc/RH_data/.

Genethon - Human Genome Research Centre

• FTP site: ftp://ftp.genethon.fr/pub/Gmap/Nature-1995/data/.
• Reference: Dib C. et al.(1996) "A comprehensive genetic map of the human genome based on 5,264 microsatellites". Nature 380: 152-154.

Marshfield Medical Research Foundation, Center for Medical Genetics - Comprehensive Human Genetic Maps

• Web site: http://research.marshfieldclinic.org/genetics/

Back to GeneLoc Home page