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Display genomic neighborhood for:

gene
enhancer
genomic coordinates
Marker types:
RHmkrSTSs mapped on RH map
cDNA STSs derived from cDNA
PolymPolymorphic markers
onYACSTSs mapped on YAC contigs

   GeneLoc map region for Chromosome 16 (51,490,858 - 55,490,998 bp) around "Bda63b12"


GenesEnhancers
#
#
 Location
Location
 Strand
Strand
Gene
Gene
 Unigene cluster
Unigene cluster
 Entrez Gene Id
Entrez Gene Id
Ensembl Id
Ensembl Id
 Description
Description
 Genetic Marker
Genetic Marker
 Marker D-number
Marker D-number
Marker type
Marker type
1chr16: 51,522,882-51,523,148





CHLC.ATA20H10 D16S757

Polym
2chr16: 51,536,214-51,536,526





SHGC-146084




3chr16: 51,541,249-51,541,474





SHGC-933




4chr16: 51,541,251-51,541,469





AFM210yg3 D16S416 RHmkr
Polym onYAC
5chr16: 51,553,436-51,647,132 + HNRNPA1P48
Exon structure
642659 ENSG00000224578 heterogeneous nuclear ribonucleoprotein A1 pseudogene 48





6chr16: 51,555,512-51,555,539 + PIR35026
Exon structure









7chr16: 51,671,236-51,671,563 - RN7SKP142
Exon structure
106480877 ENSG00000223168 RNA, 7SK small nuclear pseudogene 142





8chr16: 51,719,080-51,767,172 - LOC105371257
Exon structure
105371257







9chr16: 51,757,330-51,757,598





RPCI-4-651H17T7




10chr16: 51,762,519-51,773,173 + LINC01571
Exon structure
101927364 ENSG00000260057 long intergenic non-protein coding RNA 1571





11chr16: 51,821,966-51,822,241





SHGC-146133




12chr16: 51,822,365-51,822,642





SHGC-146132




13chr16: 51,866,217-51,866,388





s47G4 D16S2824



14chr16: 51,868,429-51,868,713





SHGC-106676




15chr16: 51,882,860-51,883,135





SHGC-111504




16chr16: 51,906,498-51,906,759





SHGC-9373




17chr16: 51,985,399-51,994,589 - LOC105371259
Exon structure
105371259







18chr16: 52,005,487-52,078,517 - C16orf97
Exon structure		 Hs.534669 388276 ENSG00000261190 chromosome 16 open reading frame 97





19chr16: 52,021,310-52,021,509





s306B6 D16S2738



20chr16: 52,023,226-52,023,345 + GC16P052023









21chr16: 52,075,803-52,076,021





CHLC.GATA81B12 D16S2623 RHmkr
Polym onYAC
22chr16: 52,078,622-52,080,489 + ENSG00000261470
Exon structure

ENSG00000261470






23chr16: 52,080,278-52,080,407





WI-3942
RHmkr


24chr16: 52,081,568-52,082,096 - ENSG00000279779
Exon structure

ENSG00000279779






25chr16: 52,083,065-52,085,109 - LINC00919
Exon structure		 Hs.535454 100505619 ENSG00000260268 long intergenic non-protein coding RNA 919





26chr16: 52,083,995-52,084,123





stSG47024
RHmkr cDNA

27chr16: 52,085,280-52,099,067 + LINC02180
Exon structure
102467079 ENSG00000261749 long intergenic non-protein coding RNA 2180





28chr16: 52,113,228-52,113,517





SHGC-77930




29chr16: 52,171,730-52,172,068





SHGC-104951




30chr16: 52,188,915-52,189,070 + GC16P052188









31chr16: 52,198,012-52,227,956 - ENSG00000260975
Exon structure

ENSG00000260975






32chr16: 52,206,866-52,207,015





WI-1256 D16S744, D16S777 RHmkr

onYAC
33chr16: 52,209,358-52,209,588 - GC16M052210









34chr16: 52,220,619-52,220,794





SHGC-15296




35chr16: 52,228,420-52,228,650





s59B10 D16S2900



36chr16: 52,238,082-52,269,440 + ENSG00000260478
Exon structure

ENSG00000260478






37chr16: 52,239,680-52,269,440 + LOC105371261
Exon structure
105371261







38chr16: 52,258,564-52,280,638 + CASC22
Exon structure		 Hs.266768 283854 ENSG00000260887 cancer susceptibility 22





39chr16: 52,264,776-52,265,046





SHGC-78172




40chr16: 52,311,080-52,311,272





s21E1 D16S2700



41chr16: 52,330,829-52,331,163





SHGC-84221




42chr16: 52,356,759-52,356,937





WI-9897 D16S2973 RHmkr

onYAC
43chr16: 52,410,709-52,410,887





s306H3 D16S2741



44chr16: 52,416,790-52,419,866 + LOC105371262
Exon structure
105371262







45chr16: 52,425,624-52,425,709





stSG47098
RHmkr cDNA

46chr16: 52,436,425-52,547,802 - TOX3
Exon structure		 Hs.460789 27324 ENSG00000103460 TOX high mobility group box family member 3





47chr16: 52,436,772-52,437,474 - ENSG00000279427
Exon structure

ENSG00000279427






48chr16: 52,520,772-52,521,061





SHGC-148286




49chr16: 52,542,174-52,542,504





WI-2061 D16S783


onYAC
50chr16: 52,544,221-52,544,563





SHGC-154410




51chr16: 52,544,939-52,545,237





s28E6 D16S2712



52chr16: 52,552,087-52,652,105 - CASC16
Exon structure		 Hs.662199 643714 ENSG00000249231 cancer susceptibility 16





53chr16: 52,552,133-52,552,280





stSG63221
RHmkr cDNA

54chr16: 52,570,221-52,570,505





RH123373




55chr16: 52,578,089-52,578,371





SHGC-156094




56chr16: 52,581,252-52,588,579 + LOC105371265
Exon structure
105371265







57chr16: 52,582,683-52,582,789





WI-18486
RHmkr cDNA

58chr16: 52,590,445-52,590,615





WI-6468 D16S2950


onYAC
59chr16: 52,598,480-52,604,318 - GC16M052598









60chr16: 52,607,054-52,613,908 + LOC105371264
Exon structure
105371264 ENSG00000260963






61chr16: 52,607,762-52,608,158 - ENSG00000260393
Exon structure

ENSG00000260393






62chr16: 52,622,115-52,631,088 + ENSG00000261261
Exon structure

ENSG00000261261






63chr16: 52,624,988-52,647,505 + GC16P052624









64chr16: 52,650,098-52,650,216





s4B9 D16S2829



65chr16: 52,655,233-52,657,320 + LOC146253
Exon structure
146253 ENSG00000234337






66chr16: 52,670,055-52,670,347





SHGC-82509




67chr16: 52,670,373-52,670,567





s34E11 D16S2800



68chr16: 52,698,322-52,701,881 - GC16M052698









69chr16: 52,735,990-52,736,017 + PIR40235
Exon structure









70chr16: 52,832,503-52,832,609





WI-4863 D16S2632



71chr16: 52,866,078-52,866,276





SHGC-84704




72chr16: 52,883,638-52,883,823





WI-4691 D16S2987 RHmkr

onYAC
73chr16: 52,919,450-52,919,599





AFM225zf2 D16S419 RHmkr
Polym onYAC
74chr16: 52,934,812-52,935,635 + PHBP21
Exon structure
390730 ENSG00000260326 prohibitin pseudogene 21





75chr16: 52,942,139-52,943,464 + LOC100288763
Exon structure
100288763 ENSG00000260258






76chr16: 52,975,953-53,052,917 - LOC105371267
Exon structure
105371267







77chr16: 53,010,281-53,011,296 - LOC100128523
Exon structure
100128523







78chr16: 53,010,395-53,011,286 - ENSG00000260939
Exon structure

ENSG00000260939






79chr16: 53,035,690-53,052,873 - ENSG00000277639
Exon structure

ENSG00000277639






80chr16: 53,054,998-53,329,150 + CHD9
Exon structure		 Hs.59159; Hs.622347 80205 ENSG00000177200 chromodomain helicase DNA binding protein 9





81chr16: 53,085,076-53,085,093 + GC16P053085









82chr16: 53,106,617-53,106,890





AFMa184xg1 D16S3034

Polym onYAC
83chr16: 53,158,240-53,168,298 - GC16M053158









84chr16: 53,168,522-53,169,450 + ENSG00000261291
Exon structure

ENSG00000261291






85chr16: 53,205,298-53,205,496





Bdya7a03 D16S2560E



86chr16: 53,206,068-53,206,308





embl-AA021061




87chr16: 53,227,146-53,227,694 + ENSG00000280227
Exon structure

ENSG00000280227






88chr16: 53,250,831-53,250,923 - GC16M053250









89chr16: 53,298,167-53,301,213 - LOC100310835
Exon structure
100310835







90chr16: 53,298,224-53,299,794 + LOC100421174
Exon structure
100421174 ENSG00000261056






91chr16: 53,299,465-53,299,608





stSG52822
RHmkr cDNA

92chr16: 53,310,797-53,311,989 + ENSG00000279589
Exon structure

ENSG00000279589






93chr16: 53,313,085-53,313,225





stSG28019




94chr16: 53,316,434-53,316,577





stSG50459
RHmkr cDNA

95chr16: 53,320,021-53,320,169





embl-AA011564




96chr16: 53,326,744-53,326,847





SGC31994
RHmkr cDNA

97chr16: 53,334,562-53,334,664 + ENSG00000238645
Exon structure

ENSG00000238645






98chr16: 53,337,453-53,337,571 + RNA5SP427
Exon structure
100873678 ENSG00000202193 RNA, 5S ribosomal pseudogene 427





99chr16: 53,354,522-53,358,390 + LOC100996483
Exon structure
100996483







100chr16: 53,359,410-53,359,573





WI-4744 D16S3234 RHmkr

onYAC
101chr16: 53,361,874-53,367,364 - LOC101929000
Exon structure
101929000







102chr16: 53,362,019-53,363,678 - ENSG00000259962
Exon structure

ENSG00000259962






103chr16: 53,362,652-53,362,687 + PIR38337
Exon structure









104chr16: 53,364,982-53,373,083 - ENSG00000260078
Exon structure

ENSG00000260078






105chr16: 53,369,362-53,371,129 - LOC643802
Exon structure		 Hs.451336 643802
U3 small nucleolar ribonucleoprotein protein MPP10-like (est)





106chr16: 53,373,493-53,384,745 + LOC102723373
Exon structure
102723373 ENSG00000261804






107chr16: 53,386,944-53,389,085 + ENSG00000262714
Exon structure

ENSG00000262714






108chr16: 53,388,434-53,388,611





stSG53206
RHmkr cDNA

109chr16: 53,389,886-53,390,563 + ENSG00000279741
Exon structure

ENSG00000279741






110chr16: 53,391,089-53,392,473 + ENSG00000280027
Exon structure

ENSG00000280027






111chr16: 53,432,478-53,439,730 + GC16P053432









112chr16: 53,433,977-53,491,649 + RBL2
Exon structure		 Hs.513609 5934 ENSG00000103479 RB transcriptional corepressor like 2





113chr16: 53,443,228-53,443,332 - RNU6-1153P
Exon structure
106480643 ENSG00000252569 RNA, U6 small nuclear 1153, pseudogene





114chr16: 53,448,748-53,449,590 + ENSG00000259926
Exon structure

ENSG00000259926






115chr16: 53,454,796-53,454,823 + PIR39747
Exon structure









116chr16: 53,478,957-53,481,550 - ENSG00000279344
Exon structure

ENSG00000279344






117chr16: 53,481,719-53,481,850





sts-H02267




118chr16: 53,487,607-53,489,943 - ENSG00000279722
Exon structure

ENSG00000279722






119chr16: 53,487,643-53,487,894





EST456895
RHmkr cDNA

120chr16: 53,487,764-53,487,894





stSG36045
RHmkr cDNA

121chr16: 53,490,340-53,490,588





SHGC-12011




122chr16: 53,490,858-53,490,998





Bda63b12 D16S2536E RHmkr cDNA

123chr16: 53,491,040-53,504,411 - AKTIP
Exon structure		 Hs.380897 64400 ENSG00000166971 AKT interacting protein





124chr16: 53,491,040-53,493,968 - GC16M053491









125chr16: 53,491,098-53,491,230





stSG31698
RHmkr cDNA

126chr16: 53,491,763-53,491,959





embl-T03419




127chr16: 53,492,162-53,492,304





stSG51954
RHmkr cDNA

128chr16: 53,505,287-53,505,314 + PIR52833
Exon structure









129chr16: 53,510,284-53,519,535 - LOC105371268
Exon structure
105371268







130chr16: 53,538,905-53,538,935 + PIR32359
Exon structure









131chr16: 53,538,905-53,538,935 + GC16P053538









132chr16: 53,538,905-53,538,935 + GC16P053540









133chr16: 53,544,359-53,560,428 - LOC105371269
Exon structure
105371269







134chr16: 53,560,249-53,560,276 - PIR49086
Exon structure









135chr16: 53,598,153-53,703,938 - RPGRIP1L
Exon structure		 Hs.298382 23322 ENSG00000103494 RPGRIP1 like





136chr16: 53,615,257-53,615,377 + GC16P053615









137chr16: 53,628,256-53,628,816 - ENSG00000275191
Exon structure

ENSG00000275191






138chr16: 53,636,823-53,637,048





AFM205ze5 D16S415 RHmkr
Polym onYAC
139chr16: 53,648,492-53,648,611





SHGC-56694




140chr16: 53,648,581-53,648,804





AFMa061yb5 D16S3137 RHmkr
Polym onYAC
141chr16: 53,662,210-53,662,569 + GC16P053662









142chr16: 53,668,831-53,669,101





RH123056




143chr16: 53,691,388-53,691,589





WI-11251
RHmkr


144chr16: 53,701,692-54,158,512 + FTO
Exon structure		 Hs.528833 79068 ENSG00000140718 FTO, alpha-ketoglutarate dependent dioxygenase





145chr16: 53,715,908-53,716,097





s308B5 D16S2748



146chr16: 53,757,068-53,757,415





SHGC-149420




147chr16: 53,775,106-53,775,396





SHGC-141218




148chr16: 53,900,645-53,900,897





WI-22517
RHmkr cDNA

149chr16: 53,940,395-53,940,596





WI-4215 D16S2986 RHmkr

onYAC
150chr16: 53,947,620-53,947,963





SHGC-84665




151chr16: 53,968,549-53,968,702 + GC16P053968









152chr16: 53,981,229-53,981,912 - ENSG00000261630
Exon structure

ENSG00000261630






153chr16: 53,991,012-53,994,454 + ENSG00000280392
Exon structure

ENSG00000280392






154chr16: 53,998,313-53,999,969 - ENSG00000260194
Exon structure

ENSG00000260194






155chr16: 53,999,437-54,014,328 + GC16P053999









156chr16: 54,027,420-54,027,558





embl-AA005225




157chr16: 54,033,997-54,054,583 - ENSG00000261049
Exon structure

ENSG00000261049






158chr16: 54,039,393-54,040,373 + FTO-IT1
Exon structure		 Hs.664629 100505692
FTO intronic transcript 1





159chr16: 54,048,345-54,048,537





SHGC-52812
RHmkr cDNA

160chr16: 54,056,198-54,057,437 + LOC105371271
Exon structure
105371271







161chr16: 54,061,140-54,061,499 + GC16P054061









162chr16: 54,067,752-54,067,872 + GC16P054067









163chr16: 54,077,510-54,081,561 - GC16M054077









164chr16: 54,089,707-54,089,862





stSG4655
RHmkr cDNA

165chr16: 54,112,248-54,117,325 - GC16M054112









166chr16: 54,113,058-54,114,466 + GC16P054113









167chr16: 54,113,247-54,113,377





WI-16741
RHmkr cDNA

168chr16: 54,114,138-54,114,414





WI-9561 D16S2971
cDNA
onYAC
169chr16: 54,114,231-54,114,379





Cda11d08 D16S2577E RHmkr cDNA

170chr16: 54,114,697-54,114,878 - ENSG00000280454
Exon structure

ENSG00000280454






171chr16: 54,116,359-54,116,665





SHGC-142454




172chr16: 54,122,586-54,123,516 - GC16M054122









173chr16: 54,129,772-54,130,062





UT949 D16S483



174chr16: 54,236,788-54,236,891





s310H3 D16S2758



175chr16: 54,239,693-54,240,654 + ENSG00000259759
Exon structure

ENSG00000259759






176chr16: 54,240,775-54,240,904





SHGC-57464




177chr16: 54,245,544-54,270,879 - LINC02169
Exon structure		 Hs.232014 100996338 ENSG00000259517 long intergenic non-protein coding RNA 2169





178chr16: 54,283,300-54,286,856 - IRX3
Exon structure		 Hs.499205 79191 ENSG00000177508 iroquois homeobox 3





179chr16: 54,285,344-54,285,408 + GC16P054286









180chr16: 54,285,604-54,289,568 + ENSG00000283689
Exon structure

ENSG00000283689






181chr16: 54,290,965-54,292,422 + ENSG00000277559
Exon structure

ENSG00000277559






182chr16: 54,305,638-54,323,771 - GC16M054305









183chr16: 54,360,246-54,360,403 + GC16P054360









184chr16: 54,366,004-54,370,699 - LINC02140
Exon structure		 Hs.112680 100996345 ENSG00000261803 long intergenic non-protein coding RNA 2140





185chr16: 54,366,176-54,366,298





stSG52132




186chr16: 54,370,408-54,374,716 + LOC105371272
Exon structure
105371272







187chr16: 54,375,213-54,375,374 + GC16P054375









188chr16: 54,396,886-54,397,252 + GC16P054396









189chr16: 54,417,954-54,424,426 + GC16P054417









190chr16: 54,439,018-54,444,713 - GC16M054440









191chr16: 54,459,162-54,492,674 - GC16M054459









192chr16: 54,475,092-54,475,350





CHLC.GGAA23C09 D16S771 RHmkr
Polym onYAC
193chr16: 54,483,401-54,483,683





SHGC-147289




194chr16: 54,493,631-54,493,901





SHGC-141984




195chr16: 54,526,422-54,542,446 + GC16P054526









196chr16: 54,532,540-54,532,878





SHGC-152985




197chr16: 54,533,630-54,533,941





SHGC-147006




198chr16: 54,542,808-54,559,100 - LINC02183
Exon structure
105371273 ENSG00000283304 long intergenic non-protein coding RNA 2183





199chr16: 54,547,553-54,547,685





s42B2 D16S2818



200chr16: 54,560,390-54,565,078 + GC16P054560









201chr16: 54,619,524-54,649,166 + GC16P054619









202chr16: 54,622,332-54,622,548





UT1936 D16S492

Polym
203chr16: 54,628,963-54,657,662 - ENSG00000283258
Exon structure

ENSG00000283258






204chr16: 54,634,442-54,652,152 + LOC105371274
Exon structure
105371274







205chr16: 54,681,886-54,688,001 + GC16P054681









206chr16: 54,699,426-54,706,374 + GC16P054699









207chr16: 54,744,814-54,745,272 + GC16P054745









208chr16: 54,766,316-54,766,445





s303A8 D16S2723



209chr16: 54,792,943-54,793,289





SHGC-85746




210chr16: 54,845,189-54,929,189 - CRNDE
Exon structure		 Hs.237396 643911 ENSG00000245694 colorectal neoplasia differentially expressed





211chr16: 54,847,216-54,854,994 + LOC105371276
Exon structure
105371276







212chr16: 54,847,247-54,848,291 - LOC101927480
Exon structure
101927480







213chr16: 54,853,553-54,893,566 - LOC105371275
Exon structure
105371275







214chr16: 54,873,998-54,876,679 - GC16M054873









215chr16: 54,876,664-54,881,371 + GC16P054876









216chr16: 54,884,068-54,889,792 - GC16M054885









217chr16: 54,907,840-54,911,758 - GC16M054907









218chr16: 54,915,084-54,915,213





sts-R07176




219chr16: 54,930,862-54,934,485 + IRX5
Exon structure		 Hs.435730 10265 ENSG00000176842 iroquois homeobox 5





220chr16: 54,934,913-54,954,665 + ENSG00000259711
Exon structure

ENSG00000259711






221chr16: 54,937,786-54,938,671 - ENSG00000259725
Exon structure

ENSG00000259725






222chr16: 55,007,982-55,008,306 + MTND5P34
Exon structure
107075255 ENSG00000260147 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 34





223chr16: 55,015,192-55,015,293





SHGC-105282




224chr16: 55,031,275-55,031,600





SHGC-154511




225chr16: 55,042,998-55,049,302 - LOC105371278
Exon structure
105371278







226chr16: 55,052,386-55,052,680





SHGC-147278




227chr16: 55,079,830-55,080,029





CHLC.GGAT1A8 D16S3255

Polym
228chr16: 55,086,510-55,086,541 + GC16P055086









229chr16: 55,088,996-55,113,158 + GC16P055088









230chr16: 55,259,969-55,333,588 - ENSG00000259283
Exon structure

ENSG00000259283






231chr16: 55,275,128-55,276,592 + GC16P055275









232chr16: 55,291,379-55,291,675 - RN7SL841P
Exon structure
106481150 ENSG00000239555 RNA, 7SL, cytoplasmic 841, pseudogene





233chr16: 55,305,535-55,305,874





SHGC-143568




234chr16: 55,321,575-55,322,686 - ENSG00000283423
Exon structure

ENSG00000283423






235chr16: 55,323,760-55,330,760 + IRX6
Exon structure		 Hs.369907 79190 ENSG00000159387 iroquois homeobox 6





236chr16: 55,332,355-55,332,967 + ENSG00000263207
Exon structure

ENSG00000263207






237chr16: 55,346,610-55,386,478 - GC16M055346









238chr16: 55,350,873-55,350,991





AFMa183wd9 D16S3032 RHmkr
Polym onYAC
239chr16: 55,352,721-55,353,088 - RPL31P56
Exon structure
100271478 ENSG00000240760 ribosomal protein L31 pseudogene 56





240chr16: 55,366,723-55,369,570 - LOC105371279
Exon structure
105371279







241chr16: 55,391,598-55,394,118 + GC16P055391









242chr16: 55,393,569-55,393,872





s47G9 D16S2825



243chr16: 55,425,574-55,426,130 - ENSG00000274508
Exon structure

ENSG00000274508






244chr16: 55,426,797-55,462,297 - MMP2-AS1
Exon structure
107984884 ENSG00000260135 MMP2 antisense RNA 1





245chr16: 55,429,041-55,429,268 + GC16P055429









246chr16: 55,479,179-55,479,579 + GC16P055479









247chr16: 55,479,179-55,479,579 + GC16P055480









248chr16: 55,484,472-55,486,871 - GC16M055484









249chr16: 55,486,618-55,488,777 + ENSG00000279030
Exon structure

ENSG00000279030