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Display genomic neighborhood for:

gene
enhancer
genomic coordinates
Marker types:
RHmkrSTSs mapped on RH map
cDNA STSs derived from cDNA
PolymPolymorphic markers
onYACSTSs mapped on YAC contigs

   GeneLoc map region for Chromosome 16 (52,116,359 - 56,116,665 bp) around "SHGC-142454"


GenesEnhancers
#
#
 Location
Location
 Strand
Strand
Gene
Gene
 Unigene cluster
Unigene cluster
 Entrez Gene Id
Entrez Gene Id
Ensembl Id
Ensembl Id
 Description
Description
 Genetic Marker
Genetic Marker
 Marker D-number
Marker D-number
Marker type
Marker type
1chr16: 52,171,730-52,172,068





SHGC-104951




2chr16: 52,188,915-52,189,070 + GC16P052188









3chr16: 52,198,012-52,227,956 - ENSG00000260975
Exon structure

ENSG00000260975






4chr16: 52,206,866-52,207,015





WI-1256 D16S744, D16S777 RHmkr

onYAC
5chr16: 52,209,358-52,209,588 - GC16M052210









6chr16: 52,220,619-52,220,794





SHGC-15296




7chr16: 52,228,420-52,228,650





s59B10 D16S2900



8chr16: 52,238,082-52,269,440 + ENSG00000260478
Exon structure

ENSG00000260478






9chr16: 52,239,680-52,269,440 + LOC105371261
Exon structure
105371261







10chr16: 52,258,564-52,280,638 + CASC22
Exon structure		 Hs.266768 283854 ENSG00000260887 cancer susceptibility 22





11chr16: 52,264,776-52,265,046





SHGC-78172




12chr16: 52,311,080-52,311,272





s21E1 D16S2700



13chr16: 52,330,829-52,331,163





SHGC-84221




14chr16: 52,356,759-52,356,937





WI-9897 D16S2973 RHmkr

onYAC
15chr16: 52,410,709-52,410,887





s306H3 D16S2741



16chr16: 52,416,790-52,419,866 + LOC105371262
Exon structure
105371262







17chr16: 52,425,624-52,425,709





stSG47098
RHmkr cDNA

18chr16: 52,436,425-52,547,802 - TOX3
Exon structure		 Hs.460789 27324 ENSG00000103460 TOX high mobility group box family member 3





19chr16: 52,436,772-52,437,474 - ENSG00000279427
Exon structure

ENSG00000279427






20chr16: 52,520,772-52,521,061





SHGC-148286




21chr16: 52,542,174-52,542,504





WI-2061 D16S783


onYAC
22chr16: 52,544,221-52,544,563





SHGC-154410




23chr16: 52,544,939-52,545,237





s28E6 D16S2712



24chr16: 52,552,087-52,652,105 - CASC16
Exon structure		 Hs.662199 643714 ENSG00000249231 cancer susceptibility 16





25chr16: 52,552,133-52,552,280





stSG63221
RHmkr cDNA

26chr16: 52,570,221-52,570,505





RH123373




27chr16: 52,578,089-52,578,371





SHGC-156094




28chr16: 52,581,252-52,588,579 + LOC105371265
Exon structure
105371265







29chr16: 52,582,683-52,582,789





WI-18486
RHmkr cDNA

30chr16: 52,590,445-52,590,615





WI-6468 D16S2950


onYAC
31chr16: 52,598,480-52,604,318 - GC16M052598









32chr16: 52,607,054-52,613,908 + LOC105371264
Exon structure
105371264 ENSG00000260963






33chr16: 52,607,762-52,608,158 - ENSG00000260393
Exon structure

ENSG00000260393






34chr16: 52,622,115-52,631,088 + ENSG00000261261
Exon structure

ENSG00000261261






35chr16: 52,624,988-52,647,505 + GC16P052624









36chr16: 52,650,098-52,650,216





s4B9 D16S2829



37chr16: 52,655,233-52,657,320 + LOC146253
Exon structure
146253 ENSG00000234337






38chr16: 52,670,055-52,670,347





SHGC-82509




39chr16: 52,670,373-52,670,567





s34E11 D16S2800



40chr16: 52,698,322-52,701,881 - GC16M052698









41chr16: 52,735,990-52,736,017 + PIR40235
Exon structure









42chr16: 52,832,503-52,832,609





WI-4863 D16S2632



43chr16: 52,866,078-52,866,276





SHGC-84704




44chr16: 52,883,638-52,883,823





WI-4691 D16S2987 RHmkr

onYAC
45chr16: 52,919,450-52,919,599





AFM225zf2 D16S419 RHmkr
Polym onYAC
46chr16: 52,934,812-52,935,635 + PHBP21
Exon structure
390730 ENSG00000260326 prohibitin pseudogene 21





47chr16: 52,942,139-52,943,464 + LOC100288763
Exon structure
100288763 ENSG00000260258






48chr16: 52,975,953-53,052,917 - LOC105371267
Exon structure
105371267







49chr16: 53,010,281-53,011,296 - LOC100128523
Exon structure
100128523







50chr16: 53,010,395-53,011,286 - ENSG00000260939
Exon structure

ENSG00000260939






51chr16: 53,035,690-53,052,873 - ENSG00000277639
Exon structure

ENSG00000277639






52chr16: 53,054,998-53,329,150 + CHD9
Exon structure		 Hs.59159; Hs.622347 80205 ENSG00000177200 chromodomain helicase DNA binding protein 9





53chr16: 53,085,076-53,085,093 + GC16P053085









54chr16: 53,106,617-53,106,890





AFMa184xg1 D16S3034

Polym onYAC
55chr16: 53,158,240-53,168,298 - GC16M053158









56chr16: 53,168,522-53,169,450 + ENSG00000261291
Exon structure

ENSG00000261291






57chr16: 53,205,298-53,205,496





Bdya7a03 D16S2560E



58chr16: 53,206,068-53,206,308





embl-AA021061




59chr16: 53,227,146-53,227,694 + ENSG00000280227
Exon structure

ENSG00000280227






60chr16: 53,250,831-53,250,923 - GC16M053250









61chr16: 53,298,167-53,301,213 - LOC100310835
Exon structure
100310835







62chr16: 53,298,224-53,299,794 + LOC100421174
Exon structure
100421174 ENSG00000261056






63chr16: 53,299,465-53,299,608





stSG52822
RHmkr cDNA

64chr16: 53,310,797-53,311,989 + ENSG00000279589
Exon structure

ENSG00000279589






65chr16: 53,313,085-53,313,225





stSG28019




66chr16: 53,316,434-53,316,577





stSG50459
RHmkr cDNA

67chr16: 53,320,021-53,320,169





embl-AA011564




68chr16: 53,326,744-53,326,847





SGC31994
RHmkr cDNA

69chr16: 53,334,562-53,334,664 + ENSG00000238645
Exon structure

ENSG00000238645






70chr16: 53,337,453-53,337,571 + RNA5SP427
Exon structure
100873678 ENSG00000202193 RNA, 5S ribosomal pseudogene 427





71chr16: 53,354,522-53,358,390 + LOC100996483
Exon structure
100996483







72chr16: 53,359,410-53,359,573





WI-4744 D16S3234 RHmkr

onYAC
73chr16: 53,361,874-53,367,364 - LOC101929000
Exon structure
101929000







74chr16: 53,362,019-53,363,678 - ENSG00000259962
Exon structure

ENSG00000259962






75chr16: 53,362,652-53,362,687 + PIR38337
Exon structure









76chr16: 53,364,982-53,373,083 - ENSG00000260078
Exon structure

ENSG00000260078






77chr16: 53,369,362-53,371,129 - LOC643802
Exon structure		 Hs.451336 643802
U3 small nucleolar ribonucleoprotein protein MPP10-like (est)





78chr16: 53,373,493-53,384,745 + LOC102723373
Exon structure
102723373 ENSG00000261804






79chr16: 53,386,944-53,389,085 + ENSG00000262714
Exon structure

ENSG00000262714






80chr16: 53,388,434-53,388,611





stSG53206
RHmkr cDNA

81chr16: 53,389,886-53,390,563 + ENSG00000279741
Exon structure

ENSG00000279741






82chr16: 53,391,089-53,392,473 + ENSG00000280027
Exon structure

ENSG00000280027






83chr16: 53,432,478-53,439,730 + GC16P053432









84chr16: 53,433,977-53,491,649 + RBL2
Exon structure		 Hs.513609 5934 ENSG00000103479 RB transcriptional corepressor like 2





85chr16: 53,443,228-53,443,332 - RNU6-1153P
Exon structure
106480643 ENSG00000252569 RNA, U6 small nuclear 1153, pseudogene





86chr16: 53,448,748-53,449,590 + ENSG00000259926
Exon structure

ENSG00000259926






87chr16: 53,454,796-53,454,823 + PIR39747
Exon structure









88chr16: 53,478,957-53,481,550 - ENSG00000279344
Exon structure

ENSG00000279344






89chr16: 53,481,719-53,481,850





sts-H02267




90chr16: 53,487,607-53,489,943 - ENSG00000279722
Exon structure

ENSG00000279722






91chr16: 53,487,643-53,487,894





EST456895
RHmkr cDNA

92chr16: 53,487,764-53,487,894





stSG36045
RHmkr cDNA

93chr16: 53,490,340-53,490,588





SHGC-12011




94chr16: 53,490,858-53,490,998





Bda63b12 D16S2536E RHmkr cDNA

95chr16: 53,491,040-53,504,411 - AKTIP
Exon structure		 Hs.380897 64400 ENSG00000166971 AKT interacting protein





96chr16: 53,491,040-53,493,968 - GC16M053491









97chr16: 53,491,098-53,491,230





stSG31698
RHmkr cDNA

98chr16: 53,491,763-53,491,959





embl-T03419




99chr16: 53,492,162-53,492,304





stSG51954
RHmkr cDNA

100chr16: 53,505,287-53,505,314 + PIR52833
Exon structure









101chr16: 53,510,284-53,519,535 - LOC105371268
Exon structure
105371268







102chr16: 53,538,905-53,538,935 + PIR32359
Exon structure









103chr16: 53,538,905-53,538,935 + GC16P053538









104chr16: 53,538,905-53,538,935 + GC16P053540









105chr16: 53,544,359-53,560,428 - LOC105371269
Exon structure
105371269







106chr16: 53,560,249-53,560,276 - PIR49086
Exon structure









107chr16: 53,598,153-53,703,938 - RPGRIP1L
Exon structure		 Hs.298382 23322 ENSG00000103494 RPGRIP1 like





108chr16: 53,615,257-53,615,377 + GC16P053615









109chr16: 53,628,256-53,628,816 - ENSG00000275191
Exon structure

ENSG00000275191






110chr16: 53,636,823-53,637,048





AFM205ze5 D16S415 RHmkr
Polym onYAC
111chr16: 53,648,492-53,648,611





SHGC-56694




112chr16: 53,648,581-53,648,804





AFMa061yb5 D16S3137 RHmkr
Polym onYAC
113chr16: 53,662,210-53,662,569 + GC16P053662









114chr16: 53,668,831-53,669,101





RH123056




115chr16: 53,691,388-53,691,589





WI-11251
RHmkr


116chr16: 53,701,692-54,158,512 + FTO
Exon structure		 Hs.528833 79068 ENSG00000140718 FTO, alpha-ketoglutarate dependent dioxygenase





117chr16: 53,715,908-53,716,097





s308B5 D16S2748



118chr16: 53,757,068-53,757,415





SHGC-149420




119chr16: 53,775,106-53,775,396





SHGC-141218




120chr16: 53,900,645-53,900,897





WI-22517
RHmkr cDNA

121chr16: 53,940,395-53,940,596





WI-4215 D16S2986 RHmkr

onYAC
122chr16: 53,947,620-53,947,963





SHGC-84665




123chr16: 53,968,549-53,968,702 + GC16P053968









124chr16: 53,981,229-53,981,912 - ENSG00000261630
Exon structure

ENSG00000261630






125chr16: 53,991,012-53,994,454 + ENSG00000280392
Exon structure

ENSG00000280392






126chr16: 53,998,313-53,999,969 - ENSG00000260194
Exon structure

ENSG00000260194






127chr16: 53,999,437-54,014,328 + GC16P053999









128chr16: 54,027,420-54,027,558





embl-AA005225




129chr16: 54,033,997-54,054,583 - ENSG00000261049
Exon structure

ENSG00000261049






130chr16: 54,039,393-54,040,373 + FTO-IT1
Exon structure		 Hs.664629 100505692
FTO intronic transcript 1





131chr16: 54,048,345-54,048,537





SHGC-52812
RHmkr cDNA

132chr16: 54,056,198-54,057,437 + LOC105371271
Exon structure
105371271







133chr16: 54,061,140-54,061,499 + GC16P054061









134chr16: 54,067,752-54,067,872 + GC16P054067









135chr16: 54,077,510-54,081,561 - GC16M054077









136chr16: 54,089,707-54,089,862





stSG4655
RHmkr cDNA

137chr16: 54,112,248-54,117,325 - GC16M054112









138chr16: 54,113,058-54,114,466 + GC16P054113









139chr16: 54,113,247-54,113,377





WI-16741
RHmkr cDNA

140chr16: 54,114,138-54,114,414





WI-9561 D16S2971
cDNA
onYAC
141chr16: 54,114,231-54,114,379





Cda11d08 D16S2577E RHmkr cDNA

142chr16: 54,114,697-54,114,878 - ENSG00000280454
Exon structure

ENSG00000280454






143chr16: 54,116,359-54,116,665





SHGC-142454




144chr16: 54,122,586-54,123,516 - GC16M054122









145chr16: 54,129,772-54,130,062





UT949 D16S483



146chr16: 54,236,788-54,236,891





s310H3 D16S2758



147chr16: 54,239,693-54,240,654 + ENSG00000259759
Exon structure

ENSG00000259759






148chr16: 54,240,775-54,240,904





SHGC-57464




149chr16: 54,245,544-54,270,879 - LINC02169
Exon structure		 Hs.232014 100996338 ENSG00000259517 long intergenic non-protein coding RNA 2169





150chr16: 54,283,300-54,286,856 - IRX3
Exon structure		 Hs.499205 79191 ENSG00000177508 iroquois homeobox 3





151chr16: 54,285,344-54,285,408 + GC16P054286









152chr16: 54,285,604-54,289,568 + ENSG00000283689
Exon structure

ENSG00000283689






153chr16: 54,290,965-54,292,422 + ENSG00000277559
Exon structure

ENSG00000277559






154chr16: 54,305,638-54,323,771 - GC16M054305









155chr16: 54,360,246-54,360,403 + GC16P054360









156chr16: 54,366,004-54,370,699 - LINC02140
Exon structure		 Hs.112680 100996345 ENSG00000261803 long intergenic non-protein coding RNA 2140





157chr16: 54,366,176-54,366,298





stSG52132




158chr16: 54,370,408-54,374,716 + LOC105371272
Exon structure
105371272







159chr16: 54,375,213-54,375,374 + GC16P054375









160chr16: 54,396,886-54,397,252 + GC16P054396









161chr16: 54,417,954-54,424,426 + GC16P054417









162chr16: 54,439,018-54,444,713 - GC16M054440









163chr16: 54,459,162-54,492,674 - GC16M054459









164chr16: 54,475,092-54,475,350





CHLC.GGAA23C09 D16S771 RHmkr
Polym onYAC
165chr16: 54,483,401-54,483,683





SHGC-147289




166chr16: 54,493,631-54,493,901





SHGC-141984




167chr16: 54,526,422-54,542,446 + GC16P054526









168chr16: 54,532,540-54,532,878





SHGC-152985




169chr16: 54,533,630-54,533,941





SHGC-147006




170chr16: 54,542,808-54,559,100 - LINC02183
Exon structure
105371273 ENSG00000283304 long intergenic non-protein coding RNA 2183





171chr16: 54,547,553-54,547,685





s42B2 D16S2818



172chr16: 54,560,390-54,565,078 + GC16P054560









173chr16: 54,619,524-54,649,166 + GC16P054619









174chr16: 54,622,332-54,622,548





UT1936 D16S492

Polym
175chr16: 54,628,963-54,657,662 - ENSG00000283258
Exon structure

ENSG00000283258






176chr16: 54,634,442-54,652,152 + LOC105371274
Exon structure
105371274







177chr16: 54,681,886-54,688,001 + GC16P054681









178chr16: 54,699,426-54,706,374 + GC16P054699









179chr16: 54,744,814-54,745,272 + GC16P054745









180chr16: 54,766,316-54,766,445





s303A8 D16S2723



181chr16: 54,792,943-54,793,289





SHGC-85746




182chr16: 54,845,189-54,929,189 - CRNDE
Exon structure		 Hs.237396 643911 ENSG00000245694 colorectal neoplasia differentially expressed





183chr16: 54,847,216-54,854,994 + LOC105371276
Exon structure
105371276







184chr16: 54,847,247-54,848,291 - LOC101927480
Exon structure
101927480







185chr16: 54,853,553-54,893,566 - LOC105371275
Exon structure
105371275







186chr16: 54,873,998-54,876,679 - GC16M054873









187chr16: 54,876,664-54,881,371 + GC16P054876









188chr16: 54,884,068-54,889,792 - GC16M054885









189chr16: 54,907,840-54,911,758 - GC16M054907









190chr16: 54,915,084-54,915,213





sts-R07176




191chr16: 54,930,862-54,934,485 + IRX5
Exon structure		 Hs.435730 10265 ENSG00000176842 iroquois homeobox 5





192chr16: 54,934,913-54,954,665 + ENSG00000259711
Exon structure

ENSG00000259711






193chr16: 54,937,786-54,938,671 - ENSG00000259725
Exon structure

ENSG00000259725






194chr16: 55,007,982-55,008,306 + MTND5P34
Exon structure
107075255 ENSG00000260147 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 34





195chr16: 55,015,192-55,015,293





SHGC-105282




196chr16: 55,031,275-55,031,600





SHGC-154511




197chr16: 55,042,998-55,049,302 - LOC105371278
Exon structure
105371278







198chr16: 55,052,386-55,052,680





SHGC-147278




199chr16: 55,079,830-55,080,029





CHLC.GGAT1A8 D16S3255

Polym
200chr16: 55,086,510-55,086,541 + GC16P055086









201chr16: 55,088,996-55,113,158 + GC16P055088









202chr16: 55,259,969-55,333,588 - ENSG00000259283
Exon structure

ENSG00000259283






203chr16: 55,275,128-55,276,592 + GC16P055275









204chr16: 55,291,379-55,291,675 - RN7SL841P
Exon structure
106481150 ENSG00000239555 RNA, 7SL, cytoplasmic 841, pseudogene





205chr16: 55,305,535-55,305,874





SHGC-143568




206chr16: 55,321,575-55,322,686 - ENSG00000283423
Exon structure

ENSG00000283423






207chr16: 55,323,760-55,330,760 + IRX6
Exon structure		 Hs.369907 79190 ENSG00000159387 iroquois homeobox 6





208chr16: 55,332,355-55,332,967 + ENSG00000263207
Exon structure

ENSG00000263207






209chr16: 55,346,610-55,386,478 - GC16M055346









210chr16: 55,350,873-55,350,991





AFMa183wd9 D16S3032 RHmkr
Polym onYAC
211chr16: 55,352,721-55,353,088 - RPL31P56
Exon structure
100271478 ENSG00000240760 ribosomal protein L31 pseudogene 56





212chr16: 55,366,723-55,369,570 - LOC105371279
Exon structure
105371279







213chr16: 55,389,700-55,506,691 + MMP2
Exon structure		 Hs.513617 4313 ENSG00000087245 matrix metallopeptidase 2





214chr16: 55,391,598-55,394,118 + GC16P055391









215chr16: 55,393,569-55,393,872





s47G9 D16S2825



216chr16: 55,425,574-55,426,130 - ENSG00000274508
Exon structure

ENSG00000274508






217chr16: 55,426,797-55,462,297 - MMP2-AS1
Exon structure
107984884 ENSG00000260135 MMP2 antisense RNA 1





218chr16: 55,429,041-55,429,268 + GC16P055429









219chr16: 55,479,179-55,479,579 + GC16P055479









220chr16: 55,479,179-55,479,579 + GC16P055480









221chr16: 55,484,472-55,486,871 - GC16M055484









222chr16: 55,486,618-55,488,777 + ENSG00000279030
Exon structure

ENSG00000279030






223chr16: 55,505,468-55,505,697





embl-M55593




224chr16: 55,505,504-55,505,650





WI-18839
RHmkr cDNA

225chr16: 55,505,631-55,505,794





1831




226chr16: 55,505,910-55,506,077





sts-N24011




227chr16: 55,506,028-55,506,143





4HM481F1-F/4HM481F1-R D16S2904



228chr16: 55,508,998-55,586,670 + LPCAT2
Exon structure		 Hs.460857 54947 ENSG00000087253 lysophosphatidylcholine acyltransferase 2





229chr16: 55,529,008-55,529,300





RH119098




230chr16: 55,530,029-55,530,121





Bdab0h04 D16S2539E



231chr16: 55,538,200-55,542,027 + ENSG00000261997
Exon structure

ENSG00000261997






232chr16: 55,566,672-55,567,687 + CAPNS2
Exon structure		 Hs.660027 84290 ENSG00000256812 calpain small subunit 2





233chr16: 55,585,001-55,585,121





stSG52056
RHmkr cDNA

234chr16: 55,636,667-55,636,931





AFMb362yf5 D16S3112 RHmkr
Polym onYAC
235chr16: 55,645,065-55,645,409





SHGC-153743




236chr16: 55,655,604-55,706,192 + SLC6A2
Exon structure		 Hs.78036 6530 ENSG00000103546 solute carrier family 6 member 2





237chr16: 55,668,716-55,669,015





SHGC-149089




238chr16: 55,692,428-55,692,757





SHGC-155920




239chr16: 55,702,537-55,702,685





SHGC-61051
RHmkr cDNA

240chr16: 55,704,119-55,706,422 + ENSG00000278928
Exon structure

ENSG00000278928






241chr16: 55,705,845-55,705,981





SHGC-17119 D16S3351



242chr16: 55,714,266-55,721,836 - LOC105371280
Exon structure
105371280







243chr16: 55,724,925-55,750,211 + CES1P2
Exon structure		 Hs.554599 390732 ENSG00000260765 carboxylesterase 1 pseudogene 2





244chr16: 55,731,212-55,731,336





s55B9 D16S2848



245chr16: 55,753,889-55,754,173





WI-2041 D16S781 RHmkr

onYAC
246chr16: 55,760,566-55,793,960 + CES1P1
Exon structure		 Hs.721645 51716 ENSG00000228695 carboxylesterase 1 pseudogene 1





247chr16: 55,802,851-55,833,337 - CES1
Exon structure		 Hs.558865 1066 ENSG00000198848 carboxylesterase 1





248chr16: 55,817,623-55,817,822





16AC5.4F/16AC5.4R D16S306



249chr16: 55,827,200-55,827,431





CHLC.ATA25D03 D16S759


onYAC
250chr16: 55,833,170-55,833,293





sts-X96751




251chr16: 55,846,154-55,956,031 - CES5A
Exon structure		 Hs.350800 221223 ENSG00000159398 carboxylesterase 5A





252chr16: 55,954,647-55,954,851





WI-10706
RHmkr


253chr16: 55,965,708-55,965,836





AFMb354wc9 D16S3110

Polym onYAC
254chr16: 55,966,068-55,966,341





COSCA2 D16S2937



255chr16: 55,966,072-55,966,335





AFMa197ye1 D16S3039

Polym onYAC
256chr16: 55,979,495-55,979,814





SHGC-110150




257chr16: 55,986,726-55,986,936





s51E1 D16S2833



258chr16: 56,075,539-56,075,852





SHGC-82170




259chr16: 56,108,980-56,109,970 + ENSG00000279523
Exon structure

ENSG00000279523






260chr16: 56,109,516-56,109,651





stSG52036
RHmkr cDNA